Hamid Hadi Alijanvand

A) Pressed Articles indexed in PubMed:

29. Biophysical Insight into the SARS-CoV2 Spike–ACE2 Interaction and Its Modulation by Hepcidin through a Multifaceted Computational Approach. Hamid Hadi-Alijanvand, Luisa Di Paola, Guang Hu, David M. Leitner, Gennady M. Verkhivker, Peixin Sun, Humanath Poudel, and Alessandro Giuliani, ACS Omega. 2022 May 10. doi: 10.1021/acsomega.2c00154

28. Effect of Lithium Drug on Binding Affinities of Glycogen Synthase Kinase-3 β to Its Network Partners: A New Computational Approach. Maryam Rouhani, Hamid Hadi-Alijanvand, Journal of Chemical Information and Modeling. 2021 September 17. doi: 10.1021/acs.jcim.1c00952

27. Studying the Effects of ACE2 Mutations on Stability, Dynamics and Dissociation Process of SARS-CoV-2 S1/hACE2 Complexes. Hamid Hadi-Alijanvand, Maryam Rouhani, Journal of Proteome Research. 2020 July 27. doi: 10.1021/acs.jproteome.0c00348

26. The discovery of a putative allosteric site in SARS-CoV-2 spike protein by an integrated structural/dynamical approach. Luisa Di Paola, Hamid Hadi-Alijanvand, Xingyu Song, Guang Hu, and Alessandro Giuliani, Journal of Proteome Research. 2020 June 17. doi: 10.1021/acs.jproteome.0c00273

25. Complex stability is encoded in binding patch softness; a monomer-based approach to predict inter-subunit affinity of protein dimers. Hadi-Alijanvand H, Journal of Proteome Research. 2019 Dec 04. doi: 10.1021/acs.jproteome.9b00594

24. Soft regions of protein surface are potent for stable dimer formation. Hadi-Alijanvand H, Journal of Biomolecular Structure and Dynamics. 2019 Sep 03. doi: 10.1080/07391102.2019.1662328

23. Partner-Specific Prediction of Protein-Dimer Stability from Unbound Structure of Monomer. Hadi-Alijanvand H, Rouhani M. J Chem Inf Model. 2018 Feb 14. doi: 10.1021/acs.jcim.7b00606 PMID: 29444397

22. A hidden aggregation-prone structure in the heart of hypoxia inducible factor prolyl hydroxylase. Hadi-Alijanvand H, Proctor EA, Ding F, Dokholyan NV, Moosavi-Movahedi AA. Proteins. 2016 May;84(5):611-23 PMID: 26868435

21. Journey of Poly-Nucleotides through OmpF Porin. Hadi-Alijanvand H, Rouhani M. J Phys Chem B. 2015  May 21;119(20):6113-28 PMID: 25965338

20. Caseoperoxidase, mixed b-casein-SDS-hemin-imidazole complex: a nano artificial enzyme. Moosavi-Movahedi Z, Gharibi H, Hadi-Alijanvand H, Akbarzadeh M, Esmaili M, Atri MS, Sefidbakht Y, Bohlooli M, Nazari K, Javadian S, Hong J, Saboury AA, Sheibani N, Moosavi-Movahedi AA. J Biomol Struct Dyn. 2015 Feb 11:1-14. PMID: 25562503

19. Implication of disulfide bridge induced thermal reversibility, structural and functional stability for luciferase. Naderi M, Moosavi-Movahedi AA, Hosseinkhani S, Nazari M, Bohlooli M, Hong J, Hadi-Alijanvand H, Sheibani N. Protein Pept Lett. 2015;22(1):23-30, PMID: 25159509.

18. Application of OmpF nanochannel forming protein in polynucleotide sequence recognition. Hadi-Alijanvand S, Mobasheri H, Hadi-Alijanvand H. J Mol Recognit. 2014 Oct;27(10):575-87. PMID: 25178853

17. Inhibition study on insulin fibrillation and cytotoxicity by paclitaxel. Kachooei E, Moosavi-Movahedi AA, Khodagholi F, Mozafarian F, Sedeghi P, Hadi-Alijanvand H, Ghasemi A, Saboury AA, Farhadi M, Sheibani N. J Biochem. 2014 Feb 17. PMID: 24535601.

16. Potassium sorbate as an AGE activator for human serum albumin in the presence and absence of glucose. F Taghavi, Moosavi-Movahedi AA, Bohlooli M, H. Hadi Alijanvand, Salami M, Maghami P, Saboury AA, M Farhadi, Yousefi R, Habibi-Rezaei M, Sheibani N. Int J Biol Macromol. 2013 Aug 31. PMID: 24001567.

15. Interaction of 2-APB, dantrolene, and TDMT with IP3R and RyR modulates ER stress-induced programmed cell death I and II in neuron-like PC12 cells: an experimental and computational investigation. Ansari N, Hadi-Alijanvand H, Sabbaghian M, Kiaei M, Khodagholi F. J Biomol Struct Dyn. 2013 Jul 8. PMID: 23829337.

14. Thermal inactivation and conformational lock studies on horse liver alcohol dehydrogenase: Structural mechanism. Moosavi-Movahedi F, Saboury AA, H. Hadi Alijanvand, Bohlooli M, Salami M, Moosavi-Movahedi AA.  Int J Biol Macromol. 2013 Mar 31;58C:66-72. PMID: 23548863.

13. Energetic domains and conformational analysis of human serum albumin upon co-incubation with sodium benzoate and glucose. F. Taghavi, A.A. Moosavi-Movahedi, M. Bohlooli, M. Habibi-Rezaei, H. Hadi Alijanvand, M. Amanlou, N. Sheibani, A.A. Saboury, F. Ahmad. J Biomol Struct Dyn. 2013 Apr 13. PMID: 23581982.

12. Thermal Unfolding Pathway of PHD2 Catalytic Domain in Three Different PHD2 Species: Computational Approaches. Hadi-Alijanvand H, Proctor EA, Goliaei B, Dokholyan NV, Moosavi-Movahedi AA. PLoS One. 2012;7(10):e47061. PMID: 23077544.

11. Inhibition of mushroom tyrosinase by a newly synthesized ligand: inhibition kinetics and computational simulations. Alijanianzadeh M, Saboury AA, Ganjali MR, Hadi-Alijanvand H, Moosavi-Movahedi AA. J Biomol Struct Dyn. 2012;30(4):448-59. PMID: 22686596.

10. The inhibitory effect of ethylenediamine on mushroom tyrosinase. Alijanianzadeh M, Saboury AA, Ganjali MR, Hadi-Alijanvand H, Moosavi-Movahedi AA. Int J Biol Macromol. 2012 Apr 1;50(3):573-7. PMID: 22313842.

9. Disruption of tubulin polymerization and cell proliferation by 1-naphthylarsonic acid. Mahinpour R, Riazi G, Shokrgozar MA, Sarbolouki MN, Ahmadian S, Douraghi M, Hadi Alijanvand H, Azadmanesh K, Heidari M, Naghdi Gheshlaghi Z, Moosavi-Movahedi AA. Cell Biol Int. 2012 Apr 1;36(4):403-8. PMID: 22214203.

8. Thermal inactivation and conformational lock of bovine carbonic anhydrase. Alaei L, Moosavi-Movahedi AA, Hadi H, Saboury AA, Ahmad F, Amani M. Protein Pept Lett. 2012 Aug;19(8):852-8. PMID: 22762185.

7. A folding pathway-dependent score to recognize membrane proteins. Hadi-Alijanvand H, Rouhani M, Proctor EA, Dokholyan NV, Moosavi-Movahedi AA. PLoS One. 2011 Mar 1;6(3):e16778. PMID: 21390303.

6. Acidic residue modifications restore chaperone activity of b-casein interacting with lysozyme. Moosavi-Movahedi AA, Rajabzadeh H, Amani M, Nourouzian D, Zare K, Hadi H, Sharifzadeh A, Poursasan N, Ahmad F, Sheibani N. Int J Biol Macromol. 2011 Nov 1;49(4):616-21. PMID: 21802443.

5. Structure and stability analysis of cytotoxic complex of camel b-lactalbumin and unsaturated fatty acids produced at high temperature. Atri MS, Saboury AA, Moosavi-Movahedi AA, Goliaei B, Sefidbakht Y, Alijanvand HH, Sharifzadeh A, Niasari-Naslaji A. J Biomol Struct Dyn. 2011 Jun;28(6):919-28. PMID: 21469752.

4. Homology modeling, docking, molecular dynamics simulation, and structural analyses of coxsakievirus B3 2A protease: an enzyme involved in the pathogenesis of inflammatory myocarditis. Maghsoudi AH, Khodagholi F, Hadi-Alijanvand H, Esfandiarei M, Sabbaghian M, Zakeri Z, Shaerzadeh F, Abtahi S, Maghsoudi N. Int J Biol Macromol. 2011 Nov 1;49(4):487-92. PMID: 21664926.

3. Targeting enteroviral 2A protease by a 16-mer synthetic peptide: inhibition of 2Apro-induced apoptosis in a stable Tet-on HeLa cell line. Maghsoudi N, Tafreshi NKh, Khodagholi F, Zakeri Z, Esfandiarei M, Hadi-Alijanvand H, Sabbaghian M, Maghsoudi AH, Sajadi M, Zohri M, Moosavi M, Zeinoddini M. Virology. 2010 Mar 30;399(1):39-45. PMID: 20096913.

2. Fibril formation of lysozyme upon interaction with sodium dodecyl sulfate at pH 9.2. Moosavi-Movahedi AA, Pirzadeh P, Hashemnia S, Ahmadian S, Hemmateenejad B, Amani M, Saboury AA, Ahmad F, Shamsipur M, Hakimelahi GH, Tsai FY, Alijanvand HH, Yousefi R. Colloids Surf B Biointerfaces. 2007 Oct 15;60(1):55-61. PMID: 17616361.

1. The correlation of cold denaturation temperature with surface stability factor of proteins. Hadi-Alijanvand H, Ahmad F, Moosavi-Movahedi AA. Protein J. 2007 Sep;26(6):395-402. PMID: 17503164.

B) Other articles & Proceedings:

5. From Folding Pathway of Hemagglutinin to Influenza Prevalence in Iran, A Computational Approach, Iranian Journal of Cellular and Molecular Researches, 15 January 2019, Articles in Press.

4. Unfolding mechanism of PHD2 as a vital protein: all-atom simulation approach, J. Iran. Chem. Soc., February 2013, DOI: 10.1007/s13738-013-0227-3.

3. Computational Biophysics Vista to Membrane Proteins; Diabetic Cell Receptors, J. Iran. Chem. Soc., October 2011, Vol. 8, No. Suppl. 3,  pp. A56-A58.

2. Kinetic stabilization of lysozyme upon interactions with B-cyclodextrin through partial unfolding, J. Iran. Chem. Soc., June 2011, Volume 8, Issue 2, pp 553-561, DOI: 10.1007/BF03249090.

1. Does trans element find cis element by futility time regulation?, Foundations of Molecular Modeling and Simulation, Washington, 2006, for press in Molecular Simulation Journal.

C) Books:

2. The NCBI; Data Analysis Tools. Andishe Zohour Press, Tehran, Iran, 2008, ISBN 978-964-6131-02-6. (This book is a compilation)

1. Calculations for Molecular Biology and Biotechnology: A Guide to Mathematics in the Laboratory. House of Biology Press, Tehran, Iran, 2006, ISBN 964-2605-05-8. (This book is a translation)


D) Abstracts:

19. Computational and experimental study of tyrosinase inhibition by a new synthesized ligand, Annual Meeting of the German Biophysical Society, University Göttingen, Germany, September 2012.

18. Caseoperoxidase: Novel Peroxidase-Like Nano-Artificial Enzyme, First International Conference on Biophysical Chemistry, Ardabil University of Medical Sciences, Iran, June 2012.

17. Thermal Inactivation and Conformational Lock Study on Horse Liver Alcohol Dehydrogenase, First International Conference on Biophysical Chemistry, Ardabil University of Medical Sciences, Iran, June 2012.

16. HAMDAM-1 as a sequence-based software for studying the physical properties of proteins, Joint Meeting of the Biophysical Society 54th annual meeting & 18th International biophysics congress. , San Francisco, California, USA , Feb 2010. >> Biophysical Journal, Volume 98, Issue 3, Supplement 1, January 2010, Page 197a.

15. Thermodynamic Aspect of Evolution for Insulin and Insulin Receptor, VIII European Symposium of the Protein Society, Zurich, Switzerland, June 2009.

14. Protein sub unitization, 8th Iran Biophysical Chemistry Conference, Zahedan, Iran, March 2008.

13. Weak but yet detectable homology in electron transfer profile between ATM, cytochrome and PCNA. 51st Biophysical Annual Meeting, Baltimore, Maryland, USA, March 2007. >> Biophysical Journal, Supplement 37a, Abstract, 165-Pos.

12. Does trans element find cis element by futility time regulation? , Foundations of Molecular Modeling and Simulation, Washington, USA, 2006.

11. Theoretical approaches in Protein-DNA recognition; Sparkle II, Postgraduate Seminars in Biophysics, IBB, spring 2006.

10. Theoretical approaches in Protein-DNA recognition; Sparkle I, Postgraduate Seminars in Biophysics, IBB, fall 2005.

9. Surface Stability Factor; as a new term for estimation of protein surface structural properties. 7th Iran Biophysical Chemistry Conference, Tabriz, Iran, July 2006.

8. Does Cis-Element Absorb Trans-Element by EMFs? , HUPO 2nd and IUBMB XIX world Congress, Montreal, Canada, 8-11 Oct 2003. >> Printed in Molecular & Cellular Proteomics 2:569-605, 2003.

7. Genome lighthouses ; EMF’s of DNA , 1st National Congress of Molecular Cell Biology, Ahwaz , Iran , 25-26 Feb 2003.

6. Activation of T-lymphocytes by intending ELFMF’s on PKC signal transduction, 10th Iranian Congress of Biology, Shiraz, Iran, 2002.

5. ELFMF’s regulate the alveolar epithelial tight junction function by affect on PKC signal transduction, 10th Iranian Congress of Biology, Shiraz, Iran, 2002.

4. A window to electromagnetic fields neurobiosensors, 1st Iranian Congress of Applied Biology, Mashhad, Iran, 5-6 Feb 2001.

3. A window to respiratory drugs and vaccines, 1st Iranian Congress of Applied Biology, Mashhad, Iran, 5-6 Feb 2001.

2. Assessment of electromagnetic fields therapy on Alzheimer’s disease, 1st Iranian Congress of Applied Biology, Mashhad, Iran, 5-6 Feb 2001.

1. Predicting the ability of binding, structure, and sequence of gene expression regulatory Proteins (1.Repressors), 1st Iranian Congress of Applied Biology, Mashhad, Iran, 5-6 Feb 2001.